Package: RepeatedHighDim 2.3.0

RepeatedHighDim: Methods for High-Dimensional Repeated Measures Data

A toolkit for the analysis of high-dimensional repeated measurements, providing functions for outlier detection, differential expression analysis, gene-set tests, and binary random data generation.

Authors:Klaus Jung [aut, cre], Jochen Kruppa [aut], Sergej Ruff [aut]

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RepeatedHighDim.pdf |RepeatedHighDim.html✨
RepeatedHighDim/json (API)

# Install 'RepeatedHighDim' in R:

install.packages('RepeatedHighDim', repos = c('https://klausjung-hannover.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.36 score 9 scripts 23k downloads 20 exports 96 dependencies

Last updated 7 months agofrom:981ac0b65f. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 22 2024
R-4.5-win	OK	Nov 22 2024
R-4.5-linux	OK	Nov 22 2024
R-4.4-win	OK	Nov 22 2024
R-4.4-mac	OK	Nov 22 2024
R-4.3-win	OK	Nov 22 2024
R-4.3-mac	OK	Nov 22 2024

Exports:bag check_limma depmed fc_ci fc_plot GA_diagplot gem GlobTestMissing gridfun hldepth iter_matrix loop netRNA RHighDim rho_bounds rmvbinary_EP rmvbinary_QA sequence_probs start_matrix summary_RHD

Dependencies:abind base64enc BH bit bit64 boot bslib cachem class cli clipr colorspace CompQuadForm cpp11 crayon ddalpha DEoptimR digest dplyr evaluate fansi farver fastmap fontawesome fs generics geometry ggplot2 glue gtable highr hms htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling lattice lifecycle linprog lme4 lpSolve magic magrittr MASS mathjaxr Matrix memoise meta metadat metafor mgcv mime minqa munsell mvtnorm netmeta nlme nloptr numDeriv pbapply pillar pkgconfig prettyunits progress purrr R6 rappdirs RColorBrewer Rcpp RcppEigen RcppProgress readr rgl rlang rmarkdown robustbase sass scales sfsmisc stringi stringr tibble tidyselect tinytex tzdb utf8 vctrs viridisLite vroom withr xfun xml2 yaml

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Help Manual

Help page	Topics
Calculates the bag	bag
Calculates the depth median.	depmed
Calculation of adjusted confidence intervals	fc_ci
Volcano plot of adjusted confidence intervals	fc_plot
Diagnostic plot for comparison of two correlation matrices.	GA_diagplot
Plots a gemstone to an interactive graphics device	gem
Detection of global group effect	GlobTestMissing
Specifies grid for the calculation of the halfspace location depths	gridfun
Calculates the halfspace location depth	hldepth
Genetic algorithm for generating correlated binary data	iter_matrix
Calculates the fence and the loop	loop
netRNA:Network meta-analysis for gene expression data	netRNA
RepeatedHighDim Package	RepeatedHighDim-package RepeatedHighDim
Detection of global group effect	RHighDim
Calculate lower and upper the bounds for pairwise correlations	rho_bounds
Simulating correlated binary variables using the algorithm by Emrich and Piedmonte (1991)	rmvbinary_EP
Simulating correlated binary variables using the algorithm by Qaqish (2003)	rmvbinary_QA
Calculation of probabilities for binary sequences	sequence_probs
Setup of the start matrix	start_matrix
Summary of RHighDim function	summary_RHD
Calculates test statistic for RHighDim	TestStatSimple
Calculates test statistic for RHighDim	TestStatSP

Package: RepeatedHighDim 2.3.0

RepeatedHighDim: Methods for High-Dimensional Repeated Measures Data

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)